Jeremy Jay

• MS/PhD Student
• Advisor:Dr. Michael A. Langston
• Email: jay AT cs.utk.edu
• Office: Claxton 122B
• Mailing Address:
  203 Claxton Complex
  Knoxville, TN 37996-3450
  
• Phone: (865) 974-6433
• Fax: (865) 974-4404
• Schedule: PDF

Research Interests

• Data Integration and Management
• Database Visualization/Access Tools (Web and GUI based)
• Regulatory Networks
• Statistical Analysis / Data Mining

Projects

• The Ontological Discovery Environment - http://ontologicaldiscovery.org
  More Information:
  • Online help Wizard (in development) - Guides the user through tasks in the ODE
  • GAGGLE Integration Screencast - ODE now supports the GAGGLE framework through the FireGoose extension
  • Introduction Screencast - old interface, but still helpful
  • External Import Interface - how to get data from your web site into ours.
  • See also the presentations and posters listed below
  
  
• Metrics for Biological Clustering Algorithms Analysis
  More Information will be available here after publication

Posters / Presentations

• Jeremy J Jay, Vivek Philip, Zuopan Li, Yun Zhang, Roumyana Kirova, Michael A Langston, Erich J Baker, Elissa J Chesler. The Ontological Discovery Environment: Integrating gene-centered data across diverse experiments. UT-ORNL-KBRIN Bioinformatics Summit, March 20-22, 2009. (Selected for Short Talk)
• Jeremy J Jay, Vivek Philip, Zuopan Li, Yun Zhang, Roumyana Kirova, Erich J Baker, Michael A Langston, Elissa J Chesler. The Phenome Interdependency and Similarity Hierarchy: A tool for genome-scale phenotypic analysis. 22nd International Mammalian Genome Conference, Prague, Czech Republic. Nov 2-5, 2008. (Presented at Student Symposium)
  
• JJ Jay, Z Li, V Philip, Y Zhang, A Perkins, R Kirova, EJ Baker, MA Langston, EJ Chesler. Ontological Discovery Environment Web Tools. UT-ORNL-KBRIN Bioinformatics Summit, April 13-15, 2007.
• Erich J Baker, Zuopan Li, Jeremy Jay, Vivek Philip, Yun Zhang, Michael A Langston, Elissa J Chesler. OntologicalDiscovery.org: A web resource for the empirical discovery of phenotypic relations across species and experimental systems. Proceedings from the 21st International Mammalian Genome Conference, Kyoto, Japan, 2007.
• EJ Chesler, JP Hulvey, R Kirova, J Jay, Z Li, V Philip, Y Zhang, HR Glenn, DJ Swanson, MA Langston, DA Goldowitz, EJ Baker. The Ontological Discovery Environment: An internet resource for integration of phenomic information through gene-centric analyses. Proceedings from the Society of Neuroscience, San Diego, CA, 2007. 100.3(23).

Enrolled Courses

• Fall 2009
• CS594.001 - Distributed Systems
• CS593 - Independent Study in Human-Computer Interaction

Completed Courses

• CS594.002 - Markov Models
• CS594.001 - Graphical User Interfaces
• CS 594 - Scripting Languages
• CS 680 - Graph Theory
• CS 594 - Computational Methods for Systems Biology
• CS 594 - Data Mining
• STAT 572 - Applied Regression Analysis
• CS 530 - Computer Systems Organization
• CS 594.005 - Fixed-Parameter Tractability
• CS 581 - Advanced Design and Analysis of Algorithms
• CS 560 - Systems Programming
• CS 494 - Database/XML Client Programming
• CS 594.003 - Graph Theory
• CS 594.005 - Computer Graphics

Biography

I grew up in Kansas City, MO, I went to undergrad at Baylor University in Waco, TX. I received my Bachelors of Science in Bioinformatics with a minor in Chemistry in May 2006. I am now pursuing a Ph.D. in Computer Science, with an emphasis on Computational Biology at the University of Tennessee.