2004

ut-cs-04-514 -- ``A Combinatorial Approach to the Analysis of Differential Gene Expression Data: The Use of Graph Algorithms for Disease Prediction and Screening"
Michael A. Langston, Lan Lin, Xinxia Peng, Nicole E. Baldwin, Christopher T. Symons, Bing Zhang and Jay R. Snoddy.
January 2004.

ut-cs-04-515 -- ``LoRS Visual Tools v 0.82 User Guide: An Introduction to the Logistical Runtime System"
M. Jenée Mitchell, Scott Atchley, Jill Covington, Stephen Soltesz.
Sept 12, 2003.

ut-cs-04-516 -- ``Why Logistical Networking is not a Content Sharing Service"
Micah Beck
December 9, 2003.

ut-cs-04-517 -- ``A Formal Analysis of Edit Distance"
Michael D. Vose
February 1, 2004.

ut-cs-04-518 -- ``Simulator Input Language: Progress on Universally Programmable Intelligent Matter"
Bruce J. MacLennan
February 3, 2004.

ut-cs-04-519 -- ``Development of a Simulator for Universally Programmable Intelligent Matter"
Alex Andriopoulos
October 24, 2003.

ut-cs-04-520 -- ``Locating Interoperability in the Network Stack"
Micah Beck, Terry Moore
February 15, 2004.

ut-cs-04-521 -- ``NetBuild: Automated Installation and Use of Network-Accessible Software Libraries"
Keith Moore, Jack Dongarra, Shirley Moore, Eric Grosse
February 18, 2004.

ut-cs-04-522 -- ``LAPACK Working Note 161: LAPACK-Style Codes for Level 2 and 3 Pivoted Cholesky Factorizations"
Craig Lucas
February 2004.

ut-cs-04-523 -- ``An Example Model of Self-Organized Aggregation and Protective Differentiation of Simple Autonomous Agents"
Bruce J. MacLennan
March 2004.

ut-cs-04-524 -- ``Scalable Parallel Algorithms for FPT Problems"
Faisal N. Abu-Khzam, Michael A. Langston, Pushkar Shanbhag and Christopher T. Symons
March 2004.

ut-cs-04-525 -- ``Computing Sparse Reduced-Rank Approximations to Sparse Matrices"
M.W. Berry, S.A. Pulatova, and G.W. Stewart
May 2004.

ut-cs-04-526 -- ``Numerically Stable Real-Number Codes Based on Random Matrices"
Zizhong Chen and Jack Dongarra
June 9, 2004.

ut-cs-04-527 -- ``Downloading Replicated, Wide-Area Files -- A Framework and Empirical Evaluation"
Rebecca L. Collins, James S. Plank
June 23, 2004.

ut-cs-04-528 -- ``Optimal, Small, Systematic Parity-Check Erasure Codes -- A Brief Presentation"
James S. Plank
July 2004.

ut-cs-04-529 -- ``Pipelining and Caching the Internet Backplane Protocol"
Micah Beck, Huadong Liu, Terry Moore and Yong Zheng
September 5, 2004.

ut-cs-04-530 -- ``Computational, Integrative and Comparative Methods for the Elucidation of Genetic Co-Expression Networks"
Nicole E. Baldwin, Elissa J. Chesler, Stefan Kirov, Michael A. Langston, Jay R. Snoddy, Robert W. Williams and Bing Zhang
September 12, 2004.

ut-cs-04-531 -- ``Radical Reconfiguration of Computers by Programmable Matter"
Bruce J. MacLennan
October, 2004.

ut-cs-04-532 -- ``Accomplishments and New Directions for 2004: Progress on Universally Programmable Intelligent Matter - UPIM Report 10"
Bruce J. MacLennan
October 15, 2004.

ut-cs-04-533 -- ``Infinite Population GA Tutorial"
Michael D. Vose
October 15, 2004.

ut-cs-04-534 -- ``Applications of Self-Organization to Command, Control, and Coordination"
Bruce MacLennan
November 17, 2004.

ut-cs-04-535 -- ``Enumeration of Small, Optimal LDPC Erasure Codes"
James S. Plank
November, 2004.

ut-cs-04-536 -- ``Assessing the Performance of Erasure Codes in the Wide-Area"
Rebecca L. Collins and James S. Plank
November, 2004.

ut-cs-04-537 -- ``Small Parity-Check Erasure Codes - Exploration and Observations"
James S. Plank, Adam L. Buchsbaum, Rebecca L. Collins and Michael G. Thomason
November, 2004.

ut-cs-04-538 -- ``Recovery Patterns for Iterative Methods in a Parallel Unstable Environment"
G. Bosilca, Z. Chen, J. Dongarra, J. Langou
December, 2004.

ut-cs-04-539 -- ``Condition Numbers of Gaussian Random Matrices"
Zizhong Chen and Jack Dongarra
December 10, 2004.

ut-cs-04-540 -- ``Building Fault Survivable MPI Programs with FT-MPI Using Diskless Checkpointing"
Zizhong Chen, Graham E. Fagg, Edgar Gabriel, Julien Langou, Thara Angskun, George Bosilca, and Jack Dongarra
December 20, 2004.

ut-cs-04-541 -- ``LAPACK Working Note 162: The Design and Implementation of the MRRR Algorithm"
Inderjit S. Dhillon, Beresford N. Parlett, and Christof Vömel
December, 2004.

ut-cs-04-542 -- ``LAPACK Working Note 163: How the MRRR Algorithm Can Fail on Tight Eigenvalue Clusters"
Beresford N. Parlett and Christof Vömel
December, 2004.

ut-cs-04-543 -- ``Performance Optimization and Modeling of Blocked Sparse Kernels"
Alfredo Buttari, Victor Eijkhout, Julien Langou, Salvatore Filippone
December, 2004.


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