2005

ut-cs-05-544 -- ``Introduction to the HPCChallenge Benchmark Suite"
Jack Dongarra and Piotr Luszczek
January 2005

ut-cs-05-545 -- ``Detecting Network Motifs in Gene Co-expression Networks"
Xinxia Peng, Michael A. Langston, Arnold M. Saxton, Nicole E. Baldwin, Jay R. Snoddy
January 2005

ut-cs-05-546 -- ``LAPACK Working Note 164: ST-HEC: Reliable and Scalable Software for Linear Algebra Computations on High End Computers"
James Demmel and Jack Dongarra
February 2005

ut-cs-05-547 -- ``LAPACK Working Note 165: Error Bounds from Extra Precise Iterative Refinement"
James Demmel, Yozo Hida, W. Kahan, Xiaoye S. Li, Soni Mukherjee, and E. Jason Riedy
February 2005

ut-cs-05-548 -- ``Comparison of Nonlinear Conjugate-Gradient Methods for Computing the Electronic Properties of Nanostructure Architectures"
Stanimire Tomov, Julien Langou, Andrew Canning, Lin-Wang Wang, and Jack Dongarra
February 2005

ut-cs-05-549 -- ``Making Meaning in Computers"
Bruce MacLennan
April 2005

ut-cs-05-550 -- ``Towards an Accurate Model for Collective Communications"
Sathish S. Vadhiyar, Graham E. Fagg, and Jack J. Dongarra
April 2005

ut-cs-05-551 -- ``LAPACK Working Note 166: Computing the Bidiagonal SVD Using Multiple Relativity Robust Representations"
Paul R. Willems, Bruno Lang, and Christof Vömel
April 2005

ut-cs-05-552 -- ``Hash functions for datatype signatures in MPI"
Julien Langou, George Bosilca, Graham Fagg and Jack Dongarra
February 2005

ut-cs-05-553 -- ``Consciousness in Robots"
Bruce MacLennan
May 2005

ut-cs-05-554 -- ``Self Adapting Numerical Software (SANS) Effort"
George Bosilca, Zizhong Chen, Jack Dongarra, Victor Eijkhout, Graham E. Fagg, Erika Fuentes, Julien Langou, Piotr Luszczek, Jelena Pjesivac-Grbovic, Keith Seymour, Haihang You, and Satish S. Vadiyar
June 14, 2005

ut-cs-05-555 -- ``Safe Controller – An Application of Sequence-Based Specification"
Lan Lin, Jesse H. Poore, Stacy J. Prowell
June 2005

ut-cs-05-556 -- ``Specifying A Software Module by Enumeration, and Transformations to and from Other Formal Representations"
Lan Lin, Jesse H. Poore, Stacy J. Prowell
June 2005

ut-cs-05-557 -- ``On the Relative Efficiency of Maximal Clique Enumeration Algorithms, with Application to High-Throughput Computational Biology"
Faisal N. Abu-Khzam, Nicole E. Baldwin, Michael A. Langston and Nagiza F. Samatova
June 2005

ut-cs-05-558 -- ``Fast, Effective Vertex Cover Kernelization: A Tale of Two Algorithms"
Faisal N. Abu-Khzam, Michael A. Langston and W. Henry Suters
June 2005

ut-cs-05-559 -- ``Conjugate-Gradient Eigenvalue Solvers in Computing Electronic Properties of Nanostructure Architectures"
Stanimire Tomov, Julien Langou, Andrew Canning, Lin-Wang Wang, and Jack Dongarra
June 13, 2005

ut-cs-05-560 -- ``Performance of Parallel Eigensolvers on Electronic Structure Calculations"
Robert C. Ward, Yihua Bai and Justin Pratt
February 2005

ut-cs-05-561 -- ``Algorithm-Based Checkpoint-Free Fault Tolerance for Parallel Matrix Computations on Volatile Resources"
Zizhong Chen and Jack Dongarra
April 20, 2005

ut-cs-05-562 -- ``LAPACK Working Note 168: PDSYEVR. ScaLAPACK's Parallel MRRR Algorithm for the Symmetric Eigenvalue Problem"
Dominic Antonelli and Christof Vömel
July 2004

ut-cs-05-563 -- ``Linear-Time Algorithms for Problems on Planar Graphs of Fixed Disk Dimension"
Faisal N. Abu-Khzam, Michael A. Langston
August 28, 2005

ut-cs-05-564 -- ``Asymptotically Faster Algorithms for the Parameterized face cover Problem"
Faisal N. Abu-Khzam, Henning Fernau and Michael A. Langston
August 28, 2005

ut-cs-05-565 -- ``The Nature of Computing - Computing in Nature"
Bruce MacLennan
October 17, 2005

ut-cs-05-566 -- ``Genome-Scale Computational Approaches to Memory-Intensive Applications in Systems Biology"
Yun Zhang, Faisal N. Abu-Khzam, Nicole E. Baldwin, Elissa J. Chesler, Michael A. Langston and Nagiza F. Samatova
November 5, 2005

ut-cs-05-567 -- ``An O(2O(k)) FPT Algorithm for the Undirected Feedback Vertex Set Problem"
Frank Dehne, Michael R. Fellows, Michael A. Langston, Frances A. Rosamond and Kim Stevens
November 5, 2005

ut-cs-05-568 -- ``A New Approach and Faster Exact Methods for the Maximum Common Subgraph Problem"
W. Henry Suters, Faisal N. Abu-Khzam, Yun Zhang, Christopher T. Symons, Nagiza F. Samatovak and Michael A. Langston
November 5, 2005

ut-cs-05-569 -- ``Optimizing Cauchy Reed-Solomon Codes for Fault-Tolerant Storage Applications"
James S. Plank
December 8, 2005

ut-cs-05-570 -- ``Enumeration of Optimal and Good Cauchy Matrices for Reed-Solomon Coding"
James S. Plank
December 8, 2005
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ut-cs-05-571 -- ``A Parallel Symmetric Block-Tridiagonal Divide-and-Conquer Algorithm"
Yihua Bai and Robert C. Ward
December 14, 2005

ut-cs-05-571b -- ``A C Simulator for the EnLight256"
M. D. Vose
2005


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